PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23550_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 210aa    MW: 23083.8 Da    PI: 5.204
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23550_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.63.6e-19115165255
          AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+++AeIrdp     k +r++lg+f tae+Aa a+++a+ k++g
  RrC23550_p1 115 HYRGVRQRP-WGKFAAEIRDP---ArKGARVWLGTFETAEDAALAYDKAAFKMRG 165
                  8********.**********8...4445*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.44E-32114173No hitNo description
Gene3DG3DSA:3.30.730.105.3E-33114173IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-23115175IPR016177DNA-binding domain
SMARTSM003802.2E-39115179IPR001471AP2/ERF domain
PROSITE profilePS5103224.5115173IPR001471AP2/ERF domain
PfamPF008471.0E-13115165IPR001471AP2/ERF domain
PRINTSPR003673.6E-11116127IPR001471AP2/ERF domain
PRINTSPR003673.6E-11139155IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MYGQGEITAA AESDYALLES IRRHLLGRDD ELQFSETIPG SCFTESWGDL PLKENDSEDM  60
LVYGILNDAF ETSSPSSDLS CLSDVNDFSA VKMEPSENVA AEAEKPKAVT ANGKHYRGVR  120
QRPWGKFAAE IRDPARKGAR VWLGTFETAE DAALAYDKAA FKMRGSRALL NFPLRINSGE  180
PGPSSSGNGK PKRRRKTEKV SSELSQVKCE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-42111180170ATERF1
3gcc_A3e-42111180170ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892611e-168AC189261.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021P11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594196.11e-116PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor 2
RefseqXP_013693573.11e-117PREDICTED: ethylene-responsive transcription factor 2-like
RefseqXP_013703691.11e-117PREDICTED: ethylene-responsive transcription factor 2-like
SwissprotO803382e-98EF101_ARATH; Ethylene-responsive transcription factor 2
TrEMBLA0A078CLG31e-116A0A078CLG3_BRANA; BnaC07g20040D protein
STRINGBra017495.1-P1e-110(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.14e-75ethylene responsive element binding factor 2